diff --git a/src/nf_modules/samtools/main.nf b/src/nf_modules/samtools/main.nf index a50a75ee42199285c5f4ed4eb80831fe8e547224..f467287fc4f84be77dcee54c66855d475ef2ce66 100644 --- a/src/nf_modules/samtools/main.nf +++ b/src/nf_modules/samtools/main.nf @@ -23,7 +23,7 @@ samtools faidx ${params.index_fasta} ${fasta} } params.filter_bam_quality_threshold = 30 -params.filter_bam_quality = "-q ${filter_bam_quality_threshold}" +params.filter_bam_quality = "-q ${params.filter_bam_quality_threshold}" params.filter_bam_quality_out = "" process filter_bam_quality { container = "${container_url}"