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Verified Commit 94bb6475 authored by Laurent Modolo's avatar Laurent Modolo
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danpos: change publishDir capture pattern

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src/nf_modules/danpos/main.nf
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View file @ 94bb6475
...@@ -13,7 +13,7 @@ process dpos_bam { ...@@ -13,7 +13,7 @@ process dpos_bam {
label "big_mem_mono_cpus" label "big_mem_mono_cpus"
tag "$file_id" tag "$file_id"
if (params.dpos_out != "") { if (params.dpos_out != "") {
publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "${file_prefix}/*" publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "*/*"
} }
input: input:
...@@ -67,7 +67,7 @@ process dpos_wig { ...@@ -67,7 +67,7 @@ process dpos_wig {
label "big_mem_mono_cpus" label "big_mem_mono_cpus"
tag "$file_id" tag "$file_id"
if (params.dpos_out != "") { if (params.dpos_out != "") {
publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "${file_prefix}/*" publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "*/*"
} }
input: input:
...@@ -126,7 +126,7 @@ process dpos_wigvswig { ...@@ -126,7 +126,7 @@ process dpos_wigvswig {
label "big_mem_mono_cpus" label "big_mem_mono_cpus"
tag "$file_id" tag "$file_id"
if (params.dpos_out != "") { if (params.dpos_out != "") {
publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "${file_prefix}/*" publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "*/*"
} }
input: input:
...@@ -173,7 +173,7 @@ process dpeak_bam { ...@@ -173,7 +173,7 @@ process dpeak_bam {
label "big_mem_mono_cpus" label "big_mem_mono_cpus"
tag "$file_id" tag "$file_id"
if (params.dpeak_out != "") { if (params.dpeak_out != "") {
publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "${file_prefix}/*" publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "*/*"
} }
input: input:
...@@ -228,7 +228,7 @@ process dpeak_wig { ...@@ -228,7 +228,7 @@ process dpeak_wig {
label "big_mem_mono_cpus" label "big_mem_mono_cpus"
tag "$file_id" tag "$file_id"
if (params.dpeak_out != "") { if (params.dpeak_out != "") {
publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "${file_prefix}/*" publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "*/*"
} }
input: input:
...@@ -288,7 +288,7 @@ process dpeak_wigvswig { ...@@ -288,7 +288,7 @@ process dpeak_wigvswig {
label "big_mem_mono_cpus" label "big_mem_mono_cpus"
tag "$file_id" tag "$file_id"
if (params.dpeak_out != "") { if (params.dpeak_out != "") {
publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "${file_prefix}/*" publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "*/*"
} }
input: input:
......
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