From 94bb6475e64bdd0e7c35cbcac347f70b9e26f943 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 5 Oct 2021 17:09:25 +0200
Subject: [PATCH] danpos: change publishDir capture pattern
---
src/nf_modules/danpos/main.nf | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf
index f23b5a8c..d2b94109 100644
--- a/src/nf_modules/danpos/main.nf
+++ b/src/nf_modules/danpos/main.nf
@@ -13,7 +13,7 @@ process dpos_bam {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpos_out != "") {
- publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "${file_prefix}/*"
+ publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "*/*"
}
input:
@@ -67,7 +67,7 @@ process dpos_wig {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpos_out != "") {
- publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "${file_prefix}/*"
+ publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "*/*"
}
input:
@@ -126,7 +126,7 @@ process dpos_wigvswig {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpos_out != "") {
- publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "${file_prefix}/*"
+ publishDir "results/${params.dpos_out}", mode: 'copy', pattern: "*/*"
}
input:
@@ -173,7 +173,7 @@ process dpeak_bam {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpeak_out != "") {
- publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "${file_prefix}/*"
+ publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "*/*"
}
input:
@@ -228,7 +228,7 @@ process dpeak_wig {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpeak_out != "") {
- publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "${file_prefix}/*"
+ publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "*/*"
}
input:
@@ -288,7 +288,7 @@ process dpeak_wigvswig {
label "big_mem_mono_cpus"
tag "$file_id"
if (params.dpeak_out != "") {
- publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "${file_prefix}/*"
+ publishDir "results/${params.dpeak_out}", mode: 'copy', pattern: "*/*"
}
input:
--
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