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Verified Commit 719ddc7d authored by Laurent Modolo's avatar Laurent Modolo
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ucsc: fix wig_to_bedgraph processes

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src/nf_modules/ucsc/main.nf
+ 9
− 3
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...@@ -53,7 +53,9 @@ process wig_to_bedgraph { ...@@ -53,7 +53,9 @@ process wig_to_bedgraph {
script: script:
""" """
wigToBedGraph ${wig} ${wig.simpleName}.bg wigToBigWig ${wig} ${wig.simpleName}.bw
bigWigToBedGraph ${wig.simpleName}.bw ${wig.simpleName}.bg
rm ${wig.simpleName}.bw
""" """
} }
...@@ -75,8 +77,12 @@ process wig2_to_bedgraph2 { ...@@ -75,8 +77,12 @@ process wig2_to_bedgraph2 {
script: script:
""" """
wigToBedGraph ${wig_a} ${wig_a.simpleName}.bg wigToBigWig ${wig_a} ${wig_a.simpleName}.bw
wigToBedGraph ${wig_b} ${wig_b.simpleName}.bg bigWigToBedGraph ${wig_a.simpleName}.bw ${wig_a.simpleName}.bg
rm ${wig_a.simpleName}.bw
wigToBigWig ${wig_b} ${wig_b.simpleName}.bw
bigWigToBedGraph ${wig_b.simpleName}.bw ${wig_b.simpleName}.bg
rm ${wig_b.simpleName}.bw
""" """
} }
......
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