diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf index ff3fbe2770b4f2629f483e50500b8728eecd8e56..914697810aa34fe4ebee759ad93a624cf0076cbc 100644 --- a/src/nf_modules/ucsc/main.nf +++ b/src/nf_modules/ucsc/main.nf @@ -53,7 +53,9 @@ process wig_to_bedgraph { script: """ -wigToBedGraph ${wig} ${wig.simpleName}.bg +wigToBigWig ${wig} ${wig.simpleName}.bw +bigWigToBedGraph ${wig.simpleName}.bw ${wig.simpleName}.bg +rm ${wig.simpleName}.bw """ } @@ -75,8 +77,12 @@ process wig2_to_bedgraph2 { script: """ -wigToBedGraph ${wig_a} ${wig_a.simpleName}.bg -wigToBedGraph ${wig_b} ${wig_b.simpleName}.bg +wigToBigWig ${wig_a} ${wig_a.simpleName}.bw +bigWigToBedGraph ${wig_a.simpleName}.bw ${wig_a.simpleName}.bg +rm ${wig_a.simpleName}.bw +wigToBigWig ${wig_b} ${wig_b.simpleName}.bw +bigWigToBedGraph ${wig_b.simpleName}.bw ${wig_b.simpleName}.bg +rm ${wig_b.simpleName}.bw """ }