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Unverified Commit 666c81d1 authored by Laurent Modolo's avatar Laurent Modolo
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samblaster: fix test.sh

parent cc9f3d11
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...@@ -19,8 +19,8 @@ process dedup_sam { ...@@ -19,8 +19,8 @@ process dedup_sam {
script: script:
""" """
samtools view -h ${bam} | \ samtools view -h ${bam} | \
samblaster --addMateTags | \ samblaster --addMateTags 2> /dev/null | \
samtools view -Sb - > ${file_id}_dedub.bam samtools view -Sb - > ${file_id}_dedup.bam
""" """
} }
......
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