diff --git a/src/nf_modules/samblaster/dedup_sams.nf b/src/nf_modules/samblaster/dedup_sams.nf index 24f4fc5ac75a41698ee0aedcc6d3ab59aae9c61d..bcfd829c6bba1c119ea71e34ef5d148c693e4fcf 100644 --- a/src/nf_modules/samblaster/dedup_sams.nf +++ b/src/nf_modules/samblaster/dedup_sams.nf @@ -19,8 +19,8 @@ process dedup_sam { script: """ samtools view -h ${bam} | \ -samblaster --addMateTags | \ -samtools view -Sb - > ${file_id}_dedub.bam +samblaster --addMateTags 2> /dev/null | \ +samtools view -Sb - > ${file_id}_dedup.bam """ }