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Verified Commit 55687f39 authored by Laurent Modolo's avatar Laurent Modolo
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ucsc: change default step size for wig to 10

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src/nf_modules/ucsc/main.nf
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...@@ -51,7 +51,7 @@ process bigwig_to_wig { ...@@ -51,7 +51,7 @@ process bigwig_to_wig {
script: script:
""" """
bigWigToBedGraph ${bw} ${bw.simpleName}.bg bigWigToBedGraph ${bw} ${bw.simpleName}.bg
bedgraph_to_wig.pl --bedgraph ${bw.simpleName}.bg --wig ${bw.simpleName}.wig --step 1 bedgraph_to_wig.pl --bedgraph ${bw.simpleName}.bg --wig ${bw.simpleName}.wig --step 10
""" """
} }
...@@ -74,8 +74,8 @@ process bigwig2_to_wig2 { ...@@ -74,8 +74,8 @@ process bigwig2_to_wig2 {
script: script:
""" """
bigWigToBedGraph ${bw_a} ${bw_a.simpleName}.bg bigWigToBedGraph ${bw_a} ${bw_a.simpleName}.bg
bedgraph_to_wig.pl --bedgraph ${bw_a.simpleName}.bg --wig ${bw_a.simpleName}.wig --step 1 bedgraph_to_wig.pl --bedgraph ${bw_a.simpleName}.bg --wig ${bw_a.simpleName}.wig --step 10
bigWigToBedGraph ${bw_b} ${bw_b.simpleName}.bg bigWigToBedGraph ${bw_b} ${bw_b.simpleName}.bg
bedgraph_to_wig.pl --bedgraph ${bw_b.simpleName}.bg --wig ${bw_b.simpleName}.wig --step 1 bedgraph_to_wig.pl --bedgraph ${bw_b.simpleName}.bg --wig ${bw_b.simpleName}.wig --step 10
""" """
} }
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