From 55687f399308ef5d556d4705c75a2cdc29a434c2 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 8 Oct 2021 13:31:51 +0200
Subject: [PATCH] ucsc: change default step size for wig to 10
---
src/nf_modules/ucsc/main.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf
index 5b203c8e..6e0c016d 100644
--- a/src/nf_modules/ucsc/main.nf
+++ b/src/nf_modules/ucsc/main.nf
@@ -51,7 +51,7 @@ process bigwig_to_wig {
script:
"""
bigWigToBedGraph ${bw} ${bw.simpleName}.bg
-bedgraph_to_wig.pl --bedgraph ${bw.simpleName}.bg --wig ${bw.simpleName}.wig --step 1
+bedgraph_to_wig.pl --bedgraph ${bw.simpleName}.bg --wig ${bw.simpleName}.wig --step 10
"""
}
@@ -74,8 +74,8 @@ process bigwig2_to_wig2 {
script:
"""
bigWigToBedGraph ${bw_a} ${bw_a.simpleName}.bg
-bedgraph_to_wig.pl --bedgraph ${bw_a.simpleName}.bg --wig ${bw_a.simpleName}.wig --step 1
+bedgraph_to_wig.pl --bedgraph ${bw_a.simpleName}.bg --wig ${bw_a.simpleName}.wig --step 10
bigWigToBedGraph ${bw_b} ${bw_b.simpleName}.bg
-bedgraph_to_wig.pl --bedgraph ${bw_b.simpleName}.bg --wig ${bw_b.simpleName}.wig --step 1
+bedgraph_to_wig.pl --bedgraph ${bw_b.simpleName}.bg --wig ${bw_b.simpleName}.wig --step 10
"""
}
\ No newline at end of file
--
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