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Verified Commit 3cc41591 authored by Laurent Modolo's avatar Laurent Modolo
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emase-zero: update error handling

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src/nf_modules/emase-zero/main.nf
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...@@ -53,10 +53,5 @@ emase-zero ${params.count} \ ...@@ -53,10 +53,5 @@ emase-zero ${params.count} \
-l ${transcript_length} \ -l ${transcript_length} \
-g gene_to_transcript.txt \ -g gene_to_transcript.txt \
${bin} 2> ${file_id}_emase-zero_report.txt ${bin} 2> ${file_id}_emase-zero_report.txt
if grep -q "ERROR" ${file_id}_emase-zero_report.txt; then
exit 1
fi
""" """
} }
\ No newline at end of file
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