From 3cc415912922736bf3633110569c790b42435bce Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 1 Oct 2021 16:43:09 +0200
Subject: [PATCH] emase-zero: update error handling
---
src/nf_modules/emase-zero/main.nf | 5 -----
1 file changed, 5 deletions(-)
diff --git a/src/nf_modules/emase-zero/main.nf b/src/nf_modules/emase-zero/main.nf
index 005bebc4..179078b1 100644
--- a/src/nf_modules/emase-zero/main.nf
+++ b/src/nf_modules/emase-zero/main.nf
@@ -53,10 +53,5 @@ emase-zero ${params.count} \
-l ${transcript_length} \
-g gene_to_transcript.txt \
${bin} 2> ${file_id}_emase-zero_report.txt
-
-if grep -q "ERROR" ${file_id}_emase-zero_report.txt; then
- exit 1
-fi
-
"""
}
\ No newline at end of file
--
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