Skip to content
Snippets Groups Projects
Verified Commit 39775a6c authored by Laurent Modolo's avatar Laurent Modolo
Browse files

agat: unzip gz file

parent 538ff01f
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
src/nf_modules/agat/main.nf
+ 2
− 1
View file @ 39775a6c
...@@ -18,6 +18,7 @@ process gff_to_bed { ...@@ -18,6 +18,7 @@ process gff_to_bed {
script: script:
""" """
agat_convert_sp_gff2bed.pl --gff ${gff} --sub cds -o ${gff.simpleName}.bed zcat ${gff} > ${gff.baseName}.gff
agat_convert_sp_gff2bed.pl --gff ${gff.baseName}.gff --sub cds -o ${gff.simpleName}.bed
""" """
} }
\ No newline at end of file
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment