hicstuff 3.1.3

src/.docker_modules/hicstuff/3.1.3/Dockerfile

+FROM conda/miniconda3
+
+LABEL Name=hicstuff Version=3.1.3
+
+COPY hicstuff/* ./ /app/
+
+RUN apt-get update && apt-get install -y procps bash
+
+RUN apt update && apt install -y procps
+RUN conda init \
+&& conda config --add channels r \
+&& conda config --add channels defaults \
+&& conda config --add channels conda-forge \
+&& conda config --add channels bioconda \
+&& conda create -y -n hicstuff
+SHELL ["conda", "run", "-n", "hicstuff", "/bin/bash", "-c"]
+RUN conda install -c conda-forge -y \
+    pip \
+    bowtie2 \
+    minimap2 \
+    bwa \
+    samtools \
+    htslib \
+    pysam \ 
+    cooler \
+&& conda clean -afy \
+&& pip install -Ur requirements.txt \
+&& pip install . \
+&& chmod -R +x /usr/local/lib/python3.10/ \
+&& chmod -R +x /usr/local/lib/python3.10/lib-dynload/ \
+&& echo "conda activate hicstuff" >> /root/.bashrc
+
+ENV PATH /usr/local/envs/hicstuff/bin:/usr/local/condabin:$PATH
\ No newline at end of file