Dockerfile

# SPDX-FileCopyrightText: 2022 Laurent Modolo <laurent.modolo@ens-lyon.fr>
#
# SPDX-License-Identifier: AGPL-3.0-or-later

FROM ubuntu:22.04

ENV CITESEQ_VERSION=1.4.5
ENV PACKAGES procps locales gcc libstdc++-10-dev libcurl4 libc6 python3 python3-pip python3-dev

RUN apt-get update && \
    apt-get install -y --no-install-recommends ${PACKAGES} && \
    apt-get clean

RUN locale-gen en_US.UTF-8
ENV LC_ALL=en_US.utf-8
ENV LANG=en_US.utf-8
ENV LC_ALL=C.UTF-8
ENV LANG=C.UTF-8


RUN pip3 install CITE-seq-Count==${CITESEQ_VERSION}