Dockerfile

FROM ubuntu:22.04

ENV PACKAGES procps locales gcc libstdc++-10-dev libcurl4 libc6 python3 python3-pip python3-dev git

RUN apt-get update && \
    apt-get install -y --no-install-recommends ${PACKAGES} && \
    apt-get clean

RUN locale-gen en_US.UTF-8
ENV LC_ALL=en_US.utf-8
ENV LANG=en_US.utf-8
ENV LC_ALL=C.UTF-8
ENV LANG=C.UTF-8

RUN git clone https://github.com/Hoohm/CITE-seq-Count.git \
    && cd CITE-seq-Count \
    && git checkout 1.5.0-alpha \
    && pip3 install requests pooch \
    && pip3 install ./