Commits · aaa4f91a3b0c3c37a4f20049deb1fc7af56f6a49 · LBMC / Hub / hic

Jul 03, 2024
- correct schema for readme · aaa4f91a
  Mia Croiset authored 8 months ago
  
  Verified
  
  aaa4f91a
- comment script · 09826a09
  Mia Croiset authored 8 months ago
  
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  09826a09
Jul 02, 2024
- ignore benchmark txt files · 71005133
  Mia Croiset authored 8 months ago
  
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  71005133
- add cumsum plot + nm contacts plot · 0d8c6e56
  Mia Croiset authored 8 months ago
  
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  0d8c6e56
Jun 25, 2024
- add replicas to plot · 810d4268
  Mia Croiset authored 8 months ago
  
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  810d4268
Jun 24, 2024
- order process by category and pipeline order · 5dd5017c
  Mia Croiset authored 8 months ago
  
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  5dd5017c
Jun 20, 2024
- add saving plot in file · 96eb4d6e
  Mia Croiset authored 8 months ago
  
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  96eb4d6e
- plot with realtime · 38a69aef
  Mia Croiset authored 8 months ago
  
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  38a69aef
- plot per condition, process in x time in y · bbac091b
  Mia Croiset authored 8 months ago
  
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  bbac091b
Jun 17, 2024
- read all trace files and plot benchmark (to clean) · 098c0efe
  Mia Croiset authored 8 months ago
  
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  098c0efe
Jun 04, 2024
- add more fields to execution trace · dcc53642
  Mia Croiset authored 9 months ago
  
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  dcc53642
May 29, 2024
- fix typo filter hicstuff · e5a65044
  Mia Croiset authored 9 months ago
  
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  e5a65044
May 22, 2024
- clean functions to call hicstuff functions · d520fcd0
  Mia Croiset authored 9 months ago
  
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  d520fcd0
- update build matrices function + delete manual sorting · 49ad90d5
  Mia Croiset authored 9 months ago
  
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  49ad90d5
May 21, 2024
- add the pairtools command to output final pairs file · bf23c27b
  Mia Croiset authored 9 months ago
  
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  bf23c27b
- use hicstuff repo for hicstuff functions · ea672538
  Mia Croiset authored 9 months ago
  
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  ea672538
May 17, 2024
- add Dockerfile to get up to date hicstuff docker image · 4d8cff4a
  Mia Croiset authored 9 months ago
  
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  4d8cff4a
- add hicstuff as git submodule · 5daab003
  Mia Croiset authored 9 months ago
  
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  5daab003
Apr 04, 2024
- change errorStrategy · 53979e39
  Mia Croiset authored 11 months ago
  
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  53979e39
Mar 27, 2024
- fix argument name for filter_pcr and cutsite_seed default value · bc97d581
  Mia Croiset authored 11 months ago
  
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  bc97d581
Mar 21, 2024
- add hicstuff report stats · a71a5bd8
  Mia Croiset authored 11 months ago
  
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  a71a5bd8
Feb 26, 2024
- update main schema · 7f46b8c2
  Mia Croiset authored 1 year ago
  
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  7f46b8c2
- delete hicstuff_min_mapq and use min_qual instead · 2894bcf4
  Mia Croiset authored 1 year ago
  
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  2894bcf4
Feb 22, 2024
- remove duplicated arguments between the two workflows · 966011bb
  Mia Croiset authored 1 year ago
  
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  966011bb
- delete build_matrix_cool_alt which is useless now · 104f1db4
  Mia Croiset authored 1 year ago
  
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  104f1db4
- connect hicstuff sub to cooler subworkflow · c85adfeb
  Mia Croiset authored 1 year ago
  
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  c85adfeb
Feb 13, 2024
- fix cpu usage from hicstuff functions · adeec642
  Mia Croiset authored 1 year ago
  
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  adeec642
Feb 07, 2024
- update json and usage files · 2d1bd8f7
  Mia Croiset authored 1 year ago
  
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  2d1bd8f7
Feb 06, 2024
- add iterative and cutsite options to docs · e55ab8a3
  Mia Croiset authored 1 year ago
  
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  e55ab8a3
Feb 02, 2024
- fix use of arima for cutsite · cdd4ed84
  Mia Croiset authored 1 year ago
  
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  cdd4ed84
Jan 30, 2024
- add iterative mode for alignment · 47784de8
  Mia Croiset authored 1 year ago
  
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  47784de8
- update schema for cutsite · e87e870b
  Mia Croiset authored 1 year ago
  
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  e87e870b
Jan 24, 2024
- hicpro cutsite fail 137 : test with process high · 65699935
  Mia Croiset authored 1 year ago
  
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  65699935
Jan 23, 2024
- change for process high · 610fade9
  Mia Croiset authored 1 year ago
  
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  610fade9
- correct sort for build matrix test full · a49b62ab
  Mia Croiset authored 1 year ago
  
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  a49b62ab
Jan 22, 2024
- try correct writing in pre pairs file · eb0ebae5
  Mia Croiset authored 1 year ago
  
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  eb0ebae5
- correct write · 4fd7280c
  Mia Croiset authored 1 year ago
  
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  4fd7280c
- correct · 2f55bd72
  Mia Croiset authored 1 year ago
  
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  2f55bd72
- test change command cutsite · 4462494b
  Mia Croiset authored 1 year ago
  
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  4462494b
Jan 19, 2024
- test sort cutsite · 713b5575
  Mia Croiset authored 1 year ago
  
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  713b5575