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Commit d8ea2398 authored by nservant's avatar nservant
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fix bug in prepare genome

parent 7996e983
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...@@ -26,7 +26,7 @@ workflow PREPARE_GENOME { ...@@ -26,7 +26,7 @@ workflow PREPARE_GENOME {
}else{ }else{
Channel.fromPath( params.bwt2_index , checkIfExists: true) Channel.fromPath( params.bwt2_index , checkIfExists: true)
.ifEmpty { exit 1, "Genome index: Provided index not found: ${params.bwt2_index}" } .ifEmpty { exit 1, "Genome index: Provided index not found: ${params.bwt2_index}" }
.into { ch_index } .set { ch_index }
} }
//*************************************** //***************************************
...@@ -39,7 +39,7 @@ workflow PREPARE_GENOME { ...@@ -39,7 +39,7 @@ workflow PREPARE_GENOME {
ch_versions = ch_versions.mix(CUSTOM_GETCHROMSIZES.out.versions) ch_versions = ch_versions.mix(CUSTOM_GETCHROMSIZES.out.versions)
}else{ }else{
Channel.fromPath( params.chromosome_size , checkIfExists: true) Channel.fromPath( params.chromosome_size , checkIfExists: true)
.into {ch_chromsize} .set {ch_chromsize}
} }
//*************************************** //***************************************
......
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