From d8ea2398921d84bf6b8a2ad7a12df4734832a3fb Mon Sep 17 00:00:00 2001
From: nservant <nicolas.servant@curie.fr>
Date: Fri, 6 May 2022 17:36:14 +0200
Subject: [PATCH] fix bug in prepare genome
---
subworkflows/local/prepare_genome.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/subworkflows/local/prepare_genome.nf b/subworkflows/local/prepare_genome.nf
index d9ee282..dd9dd29 100644
--- a/subworkflows/local/prepare_genome.nf
+++ b/subworkflows/local/prepare_genome.nf
@@ -26,7 +26,7 @@ workflow PREPARE_GENOME {
}else{
Channel.fromPath( params.bwt2_index , checkIfExists: true)
.ifEmpty { exit 1, "Genome index: Provided index not found: ${params.bwt2_index}" }
- .into { ch_index }
+ .set { ch_index }
}
//***************************************
@@ -39,7 +39,7 @@ workflow PREPARE_GENOME {
ch_versions = ch_versions.mix(CUSTOM_GETCHROMSIZES.out.versions)
}else{
Channel.fromPath( params.chromosome_size , checkIfExists: true)
- .into {ch_chromsize}
+ .set {ch_chromsize}
}
//***************************************
--
GitLab