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Commit d1f685e6 authored by nservant's avatar nservant
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update md

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......@@ -63,8 +63,7 @@ settings for your local compute environment.
iv. Start running your own analysis!
```bash
nextflow run nf-core/hic -profile <docker/singularity/conda/institute>
--reads '*_R{1,2}.fastq.gz' --genome GRCh37
nextflow run nf-core/hic -profile <docker/singularity/conda/institute> --reads '*_R{1,2}.fastq.gz' --genome GRCh37
```
See [usage docs](docs/usage.md) for all of the available options when running
......@@ -83,7 +82,9 @@ found in the `docs/` directory:
3. [Running the pipeline](docs/usage.md)
4. [Output and how to interpret the results](docs/output.md)
5. [Troubleshooting](https://nf-co.re/usage/troubleshooting)
=======
[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23hic-4A154B?logo=slack)](https://nfcore.slack.com/channels/hic)
The nf-core/hic pipeline comes with documentation about the pipeline which
......
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