[MODIF] test profile

conf/test.config

@@ -26,8 +26,17 @@ config_profile_name = 'Hi-C test data from Schalbetter et al. (2017)'
   fasta = 'https://github.com/nf-core/test-datasets/raw/hic/reference/W303_SGD_2015_JRIU00000000.fsa'
   restriction_site = 'A^AGCTT'
   ligation_site = 'AAGCTAGCTT'
-  min_mapq = 0
+  
+  min_mapq = 2
+  rm_dup = true
+  rm_singleton = true
+  rm_multi = true
 
+  min_restriction_fragment_size = 100
+  max_restriction_fragment_size = 100000
+  min_insert_size = 100
+  max_insert_size = 600
+  
   // Options
   skipCool = true
 }

nextflow.config

@@ -27,6 +27,14 @@ params {
   save_aligned_intermediates = false
   
   dnase = false
+  rm_dup = false
+  rm_singleton = false
+  rm_multi = false
+  min_restriction_fragment_size = false
+  max_restriction_fragment_size = false
+  min_insert_size = false
+  max_insert_size = false
+  min_cis_dist = false
 
   // Boilerplate options
   name = false