From c5ae57db851ca6b549fcd9875637eacfe63713ff Mon Sep 17 00:00:00 2001
From: nservant <nservant@curie.fr>
Date: Tue, 12 May 2020 11:37:14 +0200
Subject: [PATCH] [MODIF] test profile
---
conf/test.config | 11 ++++++++++-
nextflow.config | 8 ++++++++
2 files changed, 18 insertions(+), 1 deletion(-)
diff --git a/conf/test.config b/conf/test.config
index 0086d3b..e628667 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -26,8 +26,17 @@ config_profile_name = 'Hi-C test data from Schalbetter et al. (2017)'
fasta = 'https://github.com/nf-core/test-datasets/raw/hic/reference/W303_SGD_2015_JRIU00000000.fsa'
restriction_site = 'A^AGCTT'
ligation_site = 'AAGCTAGCTT'
- min_mapq = 0
+
+ min_mapq = 2
+ rm_dup = true
+ rm_singleton = true
+ rm_multi = true
+ min_restriction_fragment_size = 100
+ max_restriction_fragment_size = 100000
+ min_insert_size = 100
+ max_insert_size = 600
+
// Options
skipCool = true
}
diff --git a/nextflow.config b/nextflow.config
index b02a4f5..4ad6c94 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -27,6 +27,14 @@ params {
save_aligned_intermediates = false
dnase = false
+ rm_dup = false
+ rm_singleton = false
+ rm_multi = false
+ min_restriction_fragment_size = false
+ max_restriction_fragment_size = false
+ min_insert_size = false
+ max_insert_size = false
+ min_cis_dist = false
// Boilerplate options
name = false
--
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