@@ -119,7 +119,8 @@ We still have the line on the diagonal for the filtering option, same as with no
#### Distance law (4kb, on normal alignment)

The filter option deletes the loops and weird reads
The filter option deletes the loops and weird reads.
## Conclusion
balblaba
In terms of alignment performances, parasplit gives the higher numbers of contact. Iterative alignment may be use to have a lot of cis contacts.
Concerning the filtering options, hicstuff's `--filter_event` handle well the loops and weirds reads. Hicstuff's `--filter_pcr` needs to be studied closer to prove that it deletes rightly duplicated reads.