diff --git a/docs/benchmark.md b/docs/benchmark.md index 4f366a11cc6b12b87114cf72de276e13034577f9..35b9a57e084e340ff6a3c8043a29cb2bc9a194bb 100644 --- a/docs/benchmark.md +++ b/docs/benchmark.md @@ -119,7 +119,8 @@ We still have the line on the diagonal for the filtering option, same as with no #### Distance law (4kb, on normal alignment)  -The filter option deletes the loops and weird reads +The filter option deletes the loops and weird reads. ## Conclusion -balblaba +In terms of alignment performances, parasplit gives the higher numbers of contact. Iterative alignment may be use to have a lot of cis contacts. +Concerning the filtering options, hicstuff's `--filter_event` handle well the loops and weirds reads. Hicstuff's `--filter_pcr` needs to be studied closer to prove that it deletes rightly duplicated reads.