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Unverified Commit ac48a440 authored by Maxime U. Garcia's avatar Maxime U. Garcia Committed by GitHub
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Merge pull request #146 from nservant/dev 

Remove usages of deprecated Channel.from method
parents 0f1ff36d 4de40e33
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workflows/hic.nf
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...@@ -257,8 +257,8 @@ workflow HIC { ...@@ -257,8 +257,8 @@ workflow HIC {
ch_workflow_summary = Channel.value(workflow_summary) ch_workflow_summary = Channel.value(workflow_summary)
ch_multiqc_files = Channel.empty() ch_multiqc_files = Channel.empty()
ch_multiqc_files = ch_multiqc_files.mix(Channel.from(ch_multiqc_config)) ch_multiqc_files = ch_multiqc_files.mix(ch_multiqc_config)
ch_multiqc_files = ch_multiqc_files.mix(Channel.from(ch_multiqc_custom_config.collect().ifEmpty([]))) ch_multiqc_files = ch_multiqc_files.mix(ch_multiqc_custom_config.collect().ifEmpty([]))
ch_multiqc_files = ch_multiqc_files.mix(ch_workflow_summary.collectFile(name: 'workflow_summary_mqc.yaml')) ch_multiqc_files = ch_multiqc_files.mix(ch_workflow_summary.collectFile(name: 'workflow_summary_mqc.yaml'))
ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip.map{it->it[1]}) ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip.map{it->it[1]})
ch_multiqc_files = ch_multiqc_files.mix(HICPRO.out.mqc) ch_multiqc_files = ch_multiqc_files.mix(HICPRO.out.mqc)
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