diff --git a/workflows/hic.nf b/workflows/hic.nf index faa6a59cdcf19d5b5976257bd8f52c572374c9c1..fed1114320cbc615259ab66db847887f9eef100d 100644 --- a/workflows/hic.nf +++ b/workflows/hic.nf @@ -257,8 +257,8 @@ workflow HIC { ch_workflow_summary = Channel.value(workflow_summary) ch_multiqc_files = Channel.empty() - ch_multiqc_files = ch_multiqc_files.mix(Channel.from(ch_multiqc_config)) - ch_multiqc_files = ch_multiqc_files.mix(Channel.from(ch_multiqc_custom_config.collect().ifEmpty([]))) + ch_multiqc_files = ch_multiqc_files.mix(ch_multiqc_config) + ch_multiqc_files = ch_multiqc_files.mix(ch_multiqc_custom_config.collect().ifEmpty([])) ch_multiqc_files = ch_multiqc_files.mix(ch_workflow_summary.collectFile(name: 'workflow_summary_mqc.yaml')) ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip.map{it->it[1]}) ch_multiqc_files = ch_multiqc_files.mix(HICPRO.out.mqc)