.editorconfig

.github/ISSUE_TEMPLATE/bug_report.yml

.github/PULL_REQUEST_TEMPLATE.md

.github/workflows/awstest.yml

.github/workflows/branch.yml

.github/workflows/clean-up.yml

.github/workflows/linting.yml

.pre-commit-config.yaml

README.md

bin/check_samplesheet.py

conf/base.config

conf/igenomes.config

conf/test_full.config

docs/usage.md

lib/NfcoreSchema.groovy

lib/WorkflowHic.groovy

lib/WorkflowMain.groovy

main.nf

modules/local/hicpro/build_contact_maps.nf

modules/local/hicpro/merge_valid_interaction.nf