Merge pull request #159 from nf-core/nf-core-template-merge-2.8
Important! Template update for nf-core/tools v2.8
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- .editorconfig 1 addition, 1 deletion.editorconfig
- .github/ISSUE_TEMPLATE/bug_report.yml 1 addition, 1 deletion.github/ISSUE_TEMPLATE/bug_report.yml
- .github/PULL_REQUEST_TEMPLATE.md 2 additions, 1 deletion.github/PULL_REQUEST_TEMPLATE.md
- .github/workflows/awstest.yml 1 addition, 1 deletion.github/workflows/awstest.yml
- .github/workflows/branch.yml 1 addition, 1 deletion.github/workflows/branch.yml
- .github/workflows/clean-up.yml 24 additions, 0 deletions.github/workflows/clean-up.yml
- .github/workflows/linting.yml 1 addition, 1 deletion.github/workflows/linting.yml
- .pre-commit-config.yaml 5 additions, 0 deletions.pre-commit-config.yaml
- README.md 30 additions, 19 deletionsREADME.md
- bin/check_samplesheet.py 0 additions, 3 deletionsbin/check_samplesheet.py
- conf/base.config 1 addition, 1 deletionconf/base.config
- conf/igenomes.config 8 additions, 0 deletionsconf/igenomes.config
- conf/test_full.config 2 additions, 0 deletionsconf/test_full.config
- docs/usage.md 38 additions, 92 deletionsdocs/usage.md
- lib/NfcoreSchema.groovy 3 additions, 1 deletionlib/NfcoreSchema.groovy
- lib/WorkflowHic.groovy 8 additions, 7 deletionslib/WorkflowHic.groovy
- lib/WorkflowMain.groovy 7 additions, 6 deletionslib/WorkflowMain.groovy
- main.nf 0 additions, 1 deletionmain.nf
- modules/local/hicpro/build_contact_maps.nf 21 additions, 21 deletionsmodules/local/hicpro/build_contact_maps.nf
- modules/local/hicpro/merge_valid_interaction.nf 1 addition, 1 deletionmodules/local/hicpro/merge_valid_interaction.nf
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