Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
H
hic
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
GitLab community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
LBMC
Hub
hic
Commits
8ab27056
Commit
8ab27056
authored
Jun 18, 2020
by
nservant
Browse files
Options
Downloads
Patches
Plain Diff
bump v1.2.0
parent
6cc80fc3
No related branches found
No related tags found
No related merge requests found
Changes
5
Show whitespace changes
Inline
Side-by-side
Showing
5 changed files
.github/workflows/ci.yml
+1
-1
1 addition, 1 deletion
.github/workflows/ci.yml
CHANGELOG.md
+2
-2
2 additions, 2 deletions
CHANGELOG.md
Dockerfile
+2
-2
2 additions, 2 deletions
Dockerfile
environment.yml
+1
-1
1 addition, 1 deletion
environment.yml
nextflow.config
+2
-2
2 additions, 2 deletions
nextflow.config
with
8 additions
and
8 deletions
.github/workflows/ci.yml
+
1
−
1
View file @
8ab27056
...
@@ -22,7 +22,7 @@ jobs:
...
@@ -22,7 +22,7 @@ jobs:
-
name
:
Pull docker image
-
name
:
Pull docker image
run
:
|
run
:
|
docker pull nfcore/hic:dev
docker pull nfcore/hic:dev
docker tag nfcore/hic:dev nfcore/hic:
dev
docker tag nfcore/hic:dev nfcore/hic:
1.2.0
-
name
:
Run pipeline with test data
-
name
:
Run pipeline with test data
run
:
|
run
:
|
# nf-core: You can customise CI pipeline run tests as required
# nf-core: You can customise CI pipeline run tests as required
...
...
This diff is collapsed.
Click to expand it.
CHANGELOG.md
+
2
−
2
View file @
8ab27056
...
@@ -3,11 +3,11 @@
...
@@ -3,11 +3,11 @@
The format is based on
[
Keep a Changelog
](
http://keepachangelog.com/en/1.0.0/
)
The format is based on
[
Keep a Changelog
](
http://keepachangelog.com/en/1.0.0/
)
and this project adheres to
[
Semantic Versioning
](
http://semver.org/spec/v2.0.0.html
)
.
and this project adheres to
[
Semantic Versioning
](
http://semver.org/spec/v2.0.0.html
)
.
## v1.2.0
dev
- 2020-0
5
-1
2
## v1.2.0 - 2020-0
6
-1
8
### `Added`
### `Added`
*
Bump v1.2.0
dev
*
Bump v1.2.0
*
Merge template nf-core 1.9
*
Merge template nf-core 1.9
*
Move some options to camel_case
*
Move some options to camel_case
*
Update python scripts for python3
*
Update python scripts for python3
...
...
This diff is collapsed.
Click to expand it.
Dockerfile
+
2
−
2
View file @
8ab27056
...
@@ -7,8 +7,8 @@ RUN apt-get update && apt-get install -y gcc g++ && apt-get clean -y
...
@@ -7,8 +7,8 @@ RUN apt-get update && apt-get install -y gcc g++ && apt-get clean -y
COPY
environment.yml /
COPY
environment.yml /
RUN
conda
env
create
-f
/environment.yml
&&
conda clean
-a
RUN
conda
env
create
-f
/environment.yml
&&
conda clean
-a
ENV
PATH /opt/conda/envs/nf-core-hic-1.2.0
dev
/bin:$PATH
ENV
PATH /opt/conda/envs/nf-core-hic-1.2.0/bin:$PATH
# Dump the details of the installed packages to a file for posterity
# Dump the details of the installed packages to a file for posterity
RUN
conda
env export
--name
nf-core-hic-1.2.0
dev
>
nf-core-hic-1.2.0
dev
.yml
RUN
conda
env export
--name
nf-core-hic-1.2.0
>
nf-core-hic-1.2.0.yml
This diff is collapsed.
Click to expand it.
environment.yml
+
1
−
1
View file @
8ab27056
# You can use this file to create a conda environment for this pipeline:
# You can use this file to create a conda environment for this pipeline:
# conda env create -f environment.yml
# conda env create -f environment.yml
name
:
nf-core-hic-1.2.0
dev
name
:
nf-core-hic-1.2.0
channels
:
channels
:
-
conda-forge
-
conda-forge
-
bioconda
-
bioconda
...
...
This diff is collapsed.
Click to expand it.
nextflow.config
+
2
−
2
View file @
8ab27056
...
@@ -64,7 +64,7 @@ params {
...
@@ -64,7 +64,7 @@ params {
//
Container
slug
.
Stable
releases
should
specify
release
tag
!
//
Container
slug
.
Stable
releases
should
specify
release
tag
!
//
Developmental
code
should
specify
:
dev
//
Developmental
code
should
specify
:
dev
process
.
container
=
'nfcore/hic:
dev
'
process
.
container
=
'nfcore/hic:
1.2.0
'
//
Load
base
.
config
by
default
for
all
pipelines
//
Load
base
.
config
by
default
for
all
pipelines
includeConfig
'conf/base.config'
includeConfig
'conf/base.config'
...
@@ -135,7 +135,7 @@ manifest {
...
@@ -135,7 +135,7 @@ manifest {
description
=
'Analysis of Chromosome Conformation Capture data (Hi-C)'
description
=
'Analysis of Chromosome Conformation Capture data (Hi-C)'
mainScript
=
'main.nf'
mainScript
=
'main.nf'
nextflowVersion
=
'>=19.10.0'
nextflowVersion
=
'>=19.10.0'
version
=
'1.2.0
dev
'
version
=
'1.2.0'
}
}
//
Function
to
ensure
that
resource
requirements
don
'
t
go
beyond
//
Function
to
ensure
that
resource
requirements
don
'
t
go
beyond
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment