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Commit 6cc80fc3 authored by nservant's avatar nservant
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[MODIF] update doc for Arima

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...@@ -33,6 +33,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ...@@ -33,6 +33,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
### `Fixed` ### `Fixed`
* Fix error in doc for Arima kit usage
* Sort output of `get_valid_interaction` process as the input files of `remove_duplicates` * Sort output of `get_valid_interaction` process as the input files of `remove_duplicates`
are expected to be sorted (sort -m) are expected to be sorted (sort -m)
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...@@ -398,7 +398,7 @@ Here are a few examples: ...@@ -398,7 +398,7 @@ Here are a few examples:
* DpnII: ^GATC * DpnII: ^GATC
* BglII: A^GATCT * BglII: A^GATCT
* HindIII: A^AGCTT * HindIII: A^AGCTT
* ARIMA kit: ^GATC,^GANT * ARIMA kit: ^GATC,G^ANTC
Note that multiples restriction motifs can be provided (comma-separated) and Note that multiples restriction motifs can be provided (comma-separated) and
that 'N' base are supported. that 'N' base are supported.
...@@ -419,7 +419,7 @@ Default: 'AAGCTAGCTT' ...@@ -419,7 +419,7 @@ Default: 'AAGCTAGCTT'
--ligation_site '[Ligation motif]' --ligation_site '[Ligation motif]'
``` ```
Exemple of the ARIMA kit: GATCGATC,GATCGANT,GANTGATC,GANTGANT Exemple of the ARIMA kit: GATCGATC,GANTGATC,GANTANTC,GATCANTC
#### `--min_restriction_fragment_size` #### `--min_restriction_fragment_size`
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