bin/mapped_2hic_dnase.py

bin/mapped_2hic_fragments.py

bin/mergeSAM.py

modules.json

modules/local/cooltools/eigscis.nf

modules/local/cooltools/insulation.nf

modules/local/hicexplorer/hicFindTADs.nf

modules/local/hicexplorer/hicPlotDistVsCounts.nf

modules/local/hicpro/bowtie2_merge.nf

modules/local/hicpro/build_contact_maps.nf

modules/local/hicpro/combine_mates.nf

modules/local/hicpro/dnase_mapping_stats.nf

modules/local/hicpro/get_restriction_fragments.nf

modules/local/hicpro/get_valid_interaction.nf

modules/local/hicpro/get_valid_interaction_dnase.nf

modules/local/hicpro/hicpro2pairs.nf

modules/local/hicpro/merge_stats.nf

modules/local/hicpro/merge_valid_interaction.nf

modules/local/hicpro/run_ice.nf

modules/local/hicpro/trim_reads.nf