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Verified Commit 049c0741 authored by Mia Croiset's avatar Mia Croiset
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fix typos

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...@@ -14,10 +14,10 @@ We compare only for the hicstuff workflow. Each matrix figure is a diff between ...@@ -14,10 +14,10 @@ We compare only for the hicstuff workflow. Each matrix figure is a diff between
### Alignment ### Alignment
We have different alignement options in the pipeline : We have different alignment options in the pipeline :
- "Normal" is the basic alignment, with `bowtie2`, - "Normal" is the basic alignment, with `bowtie2`,
- "Iterative" is the iterative alignment from hicstuff with option `--iterative`, - "Iterative" is the iterative alignment from hicstuff with option `--iterative`,
- "Cutsite" is the normal alignment with read preprocessing form hicstuff with option `--cutgsite`, - "Cutsite" is the normal alignment with read preprocessing form hicstuff with option `--cutsite`,
- "Parasplit" is also with preprocessing but with the new module we made, with option `--parasplit`. - "Parasplit" is also with preprocessing but with the new module we made, with option `--parasplit`.
Here we have matrices with **4kb** resolution, **normalized to 1** (to the total of reads) and with the **diagonal down to 0**. Here we have matrices with **4kb** resolution, **normalized to 1** (to the total of reads) and with the **diagonal down to 0**.
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