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LBMC
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hic
Commits
049c0741
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049c0741
authored
4 months ago
by
Mia Croiset
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fix typos
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049c0741
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@@ -14,10 +14,10 @@ We compare only for the hicstuff workflow. Each matrix figure is a diff between
...
@@ -14,10 +14,10 @@ We compare only for the hicstuff workflow. Each matrix figure is a diff between
### Alignment
### Alignment
We have different align
e
ment options in the pipeline :
We have different alignment options in the pipeline :
-
"Normal" is the basic alignment, with
`bowtie2`
,
-
"Normal" is the basic alignment, with
`bowtie2`
,
-
"Iterative" is the iterative alignment from hicstuff with option
`--iterative`
,
-
"Iterative" is the iterative alignment from hicstuff with option
`--iterative`
,
-
"Cutsite" is the normal alignment with read preprocessing form hicstuff with option
`--cut
g
site`
,
-
"Cutsite" is the normal alignment with read preprocessing form hicstuff with option
`--cutsite`
,
-
"Parasplit" is also with preprocessing but with the new module we made, with option
`--parasplit`
.
-
"Parasplit" is also with preprocessing but with the new module we made, with option
`--parasplit`
.
Here we have matrices with
**4kb**
resolution,
**normalized to 1**
(to the total of reads) and with the
**diagonal down to 0**
.
Here we have matrices with
**4kb**
resolution,
**normalized to 1**
(to the total of reads) and with the
**diagonal down to 0**
.
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