diff --git a/docs/benchmark.md b/docs/benchmark.md index 9c6fbc03c00a6cddd0c78efbfe167e37c0595ce4..ed6bb1fac3ece723eb158ddef0efdc84def25775 100644 --- a/docs/benchmark.md +++ b/docs/benchmark.md @@ -14,10 +14,10 @@ We compare only for the hicstuff workflow. Each matrix figure is a diff between ### Alignment -We have different alignement options in the pipeline : +We have different alignment options in the pipeline : - "Normal" is the basic alignment, with `bowtie2`, - "Iterative" is the iterative alignment from hicstuff with option `--iterative`, -- "Cutsite" is the normal alignment with read preprocessing form hicstuff with option `--cutgsite`, +- "Cutsite" is the normal alignment with read preprocessing form hicstuff with option `--cutsite`, - "Parasplit" is also with preprocessing but with the new module we made, with option `--parasplit`. Here we have matrices with **4kb** resolution, **normalized to 1** (to the total of reads) and with the **diagonal down to 0**.