environment.yml 749 B
# You can use this file to create a conda environment for this pipeline:
# conda env create -f environment.yml
name: nf-core-hic-1.3.0dev
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- conda-forge::python=3.7.6
- pip=20.0.1
- conda-forge::scipy=1.4.1
- conda-forge::numpy=1.18.1
- bioconda::iced=0.5.6
- bioconda::bx-python=0.8.8
- bioconda::pysam=0.15.4
- conda-forge::pymdown-extensions=7.1
- bioconda::cooler=0.8.6
- bioconda::bowtie2=2.3.5
- bioconda::samtools=1.9
- bioconda::multiqc=1.8
## Dev tools
- bioconda::hicexplorer=3.4.3
- bioconda::bioconductor-hitc=1.32.0
- conda-forge::r-optparse=1.6.6
- bioconda::ucsc-bedgraphtobigwig=357
- pip:
- cooltools==0.3.2
- fanc==0.8.30