Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
RMI2 pipelines
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
LBMC
RMI2
RMI2 pipelines
Commits
feb32fb7
Commit
feb32fb7
authored
5 years ago
by
Hakan Ozadam
Browse files
Options
Downloads
Patches
Plain Diff
added nextflow.config
parent
041139d5
No related branches found
No related tags found
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
nextflow.config
+43
-0
43 additions, 0 deletions
nextflow.config
with
43 additions
and
0 deletions
nextflow.config
0 → 100644
+
43
−
0
View file @
feb32fb7
includeConfig
'VERSION'
manifest
{
homePage
=
'https://github.com/ribosomeprofiling/riboflow'
mainScript
=
'RIBOflow.groovy'
}
process
.
container
=
"ceniklab/riboflow:${version}"
process
.
shell
= [
'/bin/bash'
,
'-uexo'
,
'pipefail'
]
//
Uncomment
this
to
disable
caching
in
work
/
folder
.
//
process
.
cache
=
false
profiles
{
standard
{
includeConfig
'./configs/local.config'
}
stampede_local
{
includeConfig
'./configs/stampede_local.config'
}
docker_local
{
includeConfig
'./configs/docker_local.config'
}
}
timeline
{
enabled
=
true
file
=
"./nextflow_logs/timeline.html"
}
trace
{
enabled
=
true
file
=
"./nextflow_logs/trace.txt"
}
report
{
enabled
=
true
file
=
"./nextflow_logs/report.html"
}
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment