From feb32fb7b6564c641b9bea34e260e7481c0375bf Mon Sep 17 00:00:00 2001
From: Hakan Ozadam <hakan.ozadam@utexas.edu>
Date: Tue, 27 Aug 2019 16:57:28 -0500
Subject: [PATCH] added nextflow.config
---
nextflow.config | 43 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
create mode 100644 nextflow.config
diff --git a/nextflow.config b/nextflow.config
new file mode 100644
index 00000000..9e32ce30
--- /dev/null
+++ b/nextflow.config
@@ -0,0 +1,43 @@
+includeConfig 'VERSION'
+
+manifest {
+ homePage = 'https://github.com/ribosomeprofiling/riboflow'
+ mainScript = 'RIBOflow.groovy'
+}
+process.container = "ceniklab/riboflow:${version}"
+process.shell = ['/bin/bash', '-uexo','pipefail']
+
+// Uncomment this to disable caching in work/ folder.
+// process.cache = false
+
+
+profiles {
+
+ standard {
+ includeConfig './configs/local.config'
+ }
+
+ stampede_local {
+ includeConfig './configs/stampede_local.config'
+ }
+
+ docker_local {
+ includeConfig './configs/docker_local.config'
+ }
+
+}
+
+timeline {
+ enabled = true
+ file = "./nextflow_logs/timeline.html"
+}
+
+trace {
+ enabled = true
+ file = "./nextflow_logs/trace.txt"
+}
+
+report {
+ enabled = true
+ file = "./nextflow_logs/report.html"
+}
--
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