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Commit 65b98097 authored by elabaron's avatar elabaron
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RNAseq.config : correct penv config

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src/RNAseq.config
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...@@ -17,7 +17,8 @@ profiles { ...@@ -17,7 +17,8 @@ profiles {
executor = "sge" executor = "sge"
clusterOptions = "-cwd -V" clusterOptions = "-cwd -V"
queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
penv = 'openmp32' penv = 'openmp8'
cpus = 8
} }
withName: hisat2_human { withName: hisat2_human {
beforeScript = "source $baseDir/.conda_psmn.sh" beforeScript = "source $baseDir/.conda_psmn.sh"
...@@ -28,7 +29,7 @@ profiles { ...@@ -28,7 +29,7 @@ profiles {
cpus = 16 cpus = 16
time = "12h" time = "12h"
queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
penv = 'openmp32' penv = 'openmp16'
} }
withName: sort_bam { withName: sort_bam {
beforeScript = "source $baseDir/.conda_psmn.sh" beforeScript = "source $baseDir/.conda_psmn.sh"
......
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