Skip to content
Snippets Groups Projects
Commit 48498cec authored by cbedet's avatar cbedet
Browse files

Merge branch 'dev_carine' into 'master'

fix bug (index bam between star and htseq)

See merge request !2
parents 14b28e7e bdd4cdf9
No related branches found
No related tags found
1 merge request!2fix bug (index bam between star and htseq)
......@@ -26,6 +26,11 @@ include {
star_mapping_fastq_out: "star_bam/"
)
include { index_bam
} from './nf_modules/samtools/main.nf' addParams(
htseq_out: "star_bam/"
)
include { htseq_count_with_gff
} from './nf_modules/htseq/main.nf' addParams(
htseq_out: "htseq_count/"
......@@ -87,8 +92,11 @@ workflow {
fastp.out.fastq,
)
//// index bam
index_bam(star_mapping_fastq.out.bam)
htseq_count_with_gff(
star_mapping_fastq.out.bam,
index_bam.out.bam_idx,
genome_gff3_file
)
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment