kmerclust.nf: remove log.txt

src/bin/kmerclust_clust.R

+options(tidyverse.quiet = TRUE)
 library(kmerclust)
 library(tidyverse)
 args <- commandArgs(trailingOnly = TRUE)

src/bin/kmerclust_plot.R

+options(tidyverse.quiet = TRUE)
 library(kmerclust)
 library(tidyverse)
 library(ggplot2)

src/modules/kmerclust.nf

@@ -42,9 +42,7 @@ process KMERCLUST_BOOT {
     script:
     def args = task.ext.args ?: ''
     """
-    Rscript ${projectDir}/bin/kmerclust_boot.R ${specie} ${task.cpus} ${id} \
-        &> log.txt
-
+    Rscript ${projectDir}/bin/kmerclust_boot.R ${specie} ${task.cpus} ${id}
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
@@ -71,8 +69,7 @@ process KMERCLUST_CLUST {
     script:
     def args = task.ext.args ?: ''
     """
-    Rscript ${projectDir}/bin/kmerclust_clust.R ${specie} ${task.cpus} ${id} \
-        &> log.txt
+    Rscript ${projectDir}/bin/kmerclust_clust.R ${specie} ${task.cpus} ${id}
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
@@ -98,8 +95,7 @@ process KMERCLUST_MERGE {
     script:
     def args = task.ext.args ?: ''
     """
-    Rscript ${projectDir}/bin/kmerclust_merge.R ${specie} \
-        &> log.txt
+    Rscript ${projectDir}/bin/kmerclust_merge.R ${specie}
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
@@ -125,9 +121,7 @@ process KMERCLUST_PLOT {
     script:
     def args = task.ext.args ?: ''
     """
-    Rscript ${projectDir}/bin/kmerclust_plot.R ${specie} \
-        &> log.txt
-
+    Rscript ${projectDir}/bin/kmerclust_plot.R ${specie}
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":