diff --git a/src/bin/kmerclust_clust.R b/src/bin/kmerclust_clust.R index f13300e18b7727beb73dacb3c9264d3d3f9ce162..5cc466e005a43cba5ff8dc061200ac0c77cbff94 100644 --- a/src/bin/kmerclust_clust.R +++ b/src/bin/kmerclust_clust.R @@ -1,3 +1,4 @@ +options(tidyverse.quiet = TRUE) library(kmerclust) library(tidyverse) args <- commandArgs(trailingOnly = TRUE) diff --git a/src/bin/kmerclust_plot.R b/src/bin/kmerclust_plot.R index 5a62bbe49c02f0883118f802023185be578cf483..e9e9f4407d25541d9decd89b0553fe7bd75c8e2f 100644 --- a/src/bin/kmerclust_plot.R +++ b/src/bin/kmerclust_plot.R @@ -1,3 +1,4 @@ +options(tidyverse.quiet = TRUE) library(kmerclust) library(tidyverse) library(ggplot2) diff --git a/src/modules/kmerclust.nf b/src/modules/kmerclust.nf index 28113334d469b14b8a9c9c1b828a571feb61442c..530c3f7450a8a511ef9b304dbd2ad3a82f7d99b7 100644 --- a/src/modules/kmerclust.nf +++ b/src/modules/kmerclust.nf @@ -42,9 +42,7 @@ process KMERCLUST_BOOT { script: def args = task.ext.args ?: '' """ - Rscript ${projectDir}/bin/kmerclust_boot.R ${specie} ${task.cpus} ${id} \ - &> log.txt - + Rscript ${projectDir}/bin/kmerclust_boot.R ${specie} ${task.cpus} ${id} cat <<-END_VERSIONS > versions.yml "${task.process}": @@ -71,8 +69,7 @@ process KMERCLUST_CLUST { script: def args = task.ext.args ?: '' """ - Rscript ${projectDir}/bin/kmerclust_clust.R ${specie} ${task.cpus} ${id} \ - &> log.txt + Rscript ${projectDir}/bin/kmerclust_clust.R ${specie} ${task.cpus} ${id} cat <<-END_VERSIONS > versions.yml "${task.process}": @@ -98,8 +95,7 @@ process KMERCLUST_MERGE { script: def args = task.ext.args ?: '' """ - Rscript ${projectDir}/bin/kmerclust_merge.R ${specie} \ - &> log.txt + Rscript ${projectDir}/bin/kmerclust_merge.R ${specie} cat <<-END_VERSIONS > versions.yml "${task.process}": @@ -125,9 +121,7 @@ process KMERCLUST_PLOT { script: def args = task.ext.args ?: '' """ - Rscript ${projectDir}/bin/kmerclust_plot.R ${specie} \ - &> log.txt - + Rscript ${projectDir}/bin/kmerclust_plot.R ${specie} cat <<-END_VERSIONS > versions.yml "${task.process}":