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Verified Commit 8e1d2210 authored by Laurent Modolo's avatar Laurent Modolo
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add output dir for kmdiff

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src/mbelari_diff.slurm
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......@@ -14,4 +14,4 @@ KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img
WORK=$(pwd)
# kmdiff count
${KMDIFF} diff -d ${WORK}/results/mbelari_counts/ -1 1 -2 1 -t 32
${KMDIFF} diff -d ${WORK}/results/mbelari_counts/ -1 1 -2 1 -t 32 -o ${WORK}/results/mbelari_diff
src/mlongespiculosa_diff.slurm
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View file @ 8e1d2210
......@@ -14,4 +14,4 @@ KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img
WORK=$(pwd)
# kmdiff count
${KMDIFF} diff -d ${WORK}/results/mlongespiculosa_counts/ -1 7 -2 2 -t 32
${KMDIFF} diff -d ${WORK}/results/mlongespiculosa_counts/ -1 7 -2 2 -t 32 -o ${WORK}/results/mlongespiculosa_diff
src/mspiculigera_diff.slurm
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View file @ 8e1d2210
......@@ -15,4 +15,4 @@ KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img
WORK=$(pwd)
# kmdiff count
${KMDIFF} diff -d ${WORK}/results/mspiculigera_counts/ -1 1 -2 1 -t 32
${KMDIFF} diff -d ${WORK}/results/mspiculigera_counts/ -1 1 -2 1 -t 32 -o ${WORK}/results/mspiculigera_diff
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