add slurm script for kmdiff diff

src/mbelari_diff.slurm

+#!/bin/bash
+#SBATCH --job-name=mbelari_count    # Nom du jobe
+#SBATCH --output=%j.log   # Standard output et error log
+#SBATCH --time=2-00:00:00             # Délai max = 7 jours
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=32
+#SBATCH --mem=128G
+#SBATCH --partition=Lake
+
+
+cd /scratch/Bio/lmodolo/kmer_diff/
+
+KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
+WORK=$(pwd)
+
+# kmdiff count
+${KMDIFF} diff -d ${WORK}/results/mbelari_counts/ -1 1 -2 1 -t 32

src/mlongespiculosa_diff.slurm

+#!/bin/bash
+#SBATCH --job-name=mlongespiculosa_count    # Nom du jobe
+#SBATCH --output=%j.log   # Standard output et error log
+#SBATCH --time=2-00:00:00             # Délai max = 7 jours
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=32
+#SBATCH --mem=128G
+#SBATCH --partition=Lake
+
+
+cd /scratch/Bio/lmodolo/kmer_diff/
+
+KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
+WORK=$(pwd)
+
+# kmdiff count
+${KMDIFF} diff -d ${WORK}/results/mlongespiculosa_counts/ -1 7 -2 2 -t 32

src/mspiculigera_diff.slurm

+#!/bin/bash
+#
+#SBATCH --job-name=mspiculigera_count    # Nom du jobe
+#SBATCH --output=%j.log   # Standard output et error log
+#SBATCH --time=2-00:00:00             # Délai max = 7 jours
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=32
+#SBATCH --mem=128G
+#SBATCH --partition=Lake
+
+
+cd /scratch/Bio/lmodolo/kmer_diff/
+
+KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
+WORK=$(pwd)
+
+# kmdiff count
+${KMDIFF} diff -d ${WORK}/results/mspiculigera_counts/ -1 1 -2 1 -t 32