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mlongespiculosa_diff.slurm

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    • Laurent Modolo's avatar
    km_diff increase memory
    Laurent Modolo authored
    86902b92
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    Laurent Modolo's avatar 86902b92
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    mlongespiculosa_diff.slurm 568 B
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    #!/bin/bash
#SBATCH --job-name=mlongespiculosa_count    # Nom du jobe
#SBATCH --output=%j.log   # Standard output et error log
#SBATCH --time=2-00:00:00             # Délai max = 7 jours
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=10
#SBATCH --mem=200G
#SBATCH --partition=Lake


cd /scratch/Bio/lmodolo/kmer_diff/

KMDIFF="/Xnfs/abc/charliecloud_bin/ch-run -b /scratch /Xnfs/abc/charliecloud/img/lbmc%kmdiff+1.0.1 -- kmdiff"
WORK=$(pwd)

# kmdiff count
${KMDIFF} diff -d ${WORK}/results/mlongespiculosa_counts/ -1 7 -2 2 -t 10 -o ${WORK}/results/mlongespiculosa_diff