fastkmers.sh

# build docker image
docker build src/fastkmer -t 'lbmc/fastkmers:025efdf'
docker push lbmc/fastkmers:025efdf

# build charliecloud image
ch-image pull -s /Xnfs/abc/charliecloud/ lbmc/fastkmers:025efdf
update_ch_image.sh

alias fastkmers="ch-run -b /scratch -c $PWD /Xnfs/abc/charliecloud/img/lbmc%fastkmers+025efdf -- fastkmers"

WORK=$(pwd)
mkdir results/