add fastkmer.sh

src/fastkmers.sh

+# build docker image
+docker build src/fastkmer -t 'lbmc/fastkmers:025efdf'
+docker push lbmc/fastkmers:025efdf
+
+# build charliecloud image
+ch-image pull -s /Xnfs/abc/charliecloud/ lbmc/fastkmers:025efdf
+update_ch_image.sh
+
+alias fastkmers="ch-run -b /scratch -c $PWD /Xnfs/abc/charliecloud/img/lbmc%fastkmers+025efdf -- fastkmers"
+
+WORK=$(pwd)
+mkdir results/
+
+

src/kmdiff.sh

 # build docker image
-docker build src/ -t 'lbmc/kmdiff:1.0.1'
+docker build src/kmdiff/ -t 'lbmc/kmdiff:1.0.1'
 docker push lbmc/kmdiff:1.0.1
 
 # build charliecloud image