kmerclust.nf

process MERGEKMER {
    tag "$specie"
    label 'big_mem_multi_cpus'

    container "lbmc/kmerclust:0.0.1"
    publishDir "results/${params.kmer_size}/${specie}/", mode: 'copy'

    input:
    tuple val(specie), path(csv)

    output:
    tuple val(specie), path("*.pdf"), emit: pdf 
    path "versions.yml"           , emit: versions

    script:
    def args = task.ext.args ?: ''
    """
    Rscript ../bin/kmerclust.R ${params.csv} ${csv} ${specie}

    cat <<-END_VERSIONS > versions.yml
    "${task.process}":
        Rkmerclust: 0.0.1 
    END_VERSIONS
    """
}