Bowtie2.def

Bootstrap: docker
From: ubuntu:18.04

%labels
MAINTAINER Laurent Modolo

%post
BOWTIE2_VERSION=2.3.4.1
SAMTOOLS_VERSION=1.7
PACKAGES="bowtie2=${BOWTIE2_VERSION}* \
samtools=${SAMTOOLS_VERSION}* \
perl=5.26.1*"

apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean

%environment
export BOWTIE2_VERSION=2.3.4.1
export SAMTOOLS_VERSION=1.7

%runscript
exec /bin/bash "$@"