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yjia01
nextflow
Commits
bbc6d352
Verified
Commit
bbc6d352
authored
May 22, 2019
by
Laurent Modolo
Browse files
nextflow.pbs: give a hint that the results folder should be a parameter
of the pipe
parent
e25a64b9
Changes
1
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Inline
Side-by-side
src/nextflow.pbs
View file @
bbc6d352
...
...
@@ -28,9 +28,11 @@ NF_VERSION=19.04
NEXTFLOW
=
/pbs/throng/lbmc/cl7/nextflow/
${
NF_VERSION
}
/nextflow
NF
=
${
SCRATCH
}
/
${
PROJECT
}
/src/
${
PIPELINE
}
.nf
CONFIG
=
${
SCRATCH
}
/
${
PROJECT
}
/src/
${
PIPELINE
}
.config
DATA
=
${
SCRATCH
}
/
${
PROJECT
}
/data
${
NEXTFLOW
}
${
NF
}
-c
${
CONFIG
}
-profile
ccin2p3
\
--fasta
"
${
SCRATCH
}
/<project>/data/fasta"
\
--fasta
"
${
DATA
}
/fasta"
\
--results
"
${
SCRATCH
}
/
${
PROJECT
}
/results/"
-w
"
${
SCRATCH
}
/
${
PROJECT
}
/work/"
\
-with-report
"
${
SCRATCH
}
/
${
PROJECT
}
/results/
${
PIPELINE
}
_report.html"
\
-with-timeline
"
${
SCRATCH
}
/
${
PROJECT
}
/results/
${
PIPELINE
}
_timeline.html"
\
...
...
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