Add porechop and compress all fastq files during the workflow.
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- src/.docker_modules/porechop/0.2.4/Dockerfile 1 addition, 3 deletionssrc/.docker_modules/porechop/0.2.4/Dockerfile
- src/.docker_modules/porechop/0.2.4/docker_init.sh 1 addition, 1 deletionsrc/.docker_modules/porechop/0.2.4/docker_init.sh
- src/bolero.nf 8 additions, 2 deletionssrc/bolero.nf
- src/nf_modules/cutadapt/main.nf 2 additions, 2 deletionssrc/nf_modules/cutadapt/main.nf
- src/nf_modules/minimap2/main.nf 1 addition, 1 deletionsrc/nf_modules/minimap2/main.nf
- src/nf_modules/porechop/main.nf 5 additions, 4 deletionssrc/nf_modules/porechop/main.nf
- src/nf_modules/seqkit/main.nf 10 additions, 29 deletionssrc/nf_modules/seqkit/main.nf
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