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Commit 5b5b8501 authored by Xavier Grand's avatar Xavier Grand
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Add default ont-guppy option to basecalling, --model-file

parent b4d75c61
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...@@ -9,7 +9,7 @@ params.min_qscore = 7.0 ...@@ -9,7 +9,7 @@ params.min_qscore = 7.0
params.gpu_runners_per_device = 1 params.gpu_runners_per_device = 1
params.num_callers = 1 params.num_callers = 1
params.chunks_per_runner = 1 params.chunks_per_runner = 1
params.options = "--model_file /opt/ont/guppy/data/template_r9.4.1_e8.1_sup.jsn" params.options = "-c /opt/ont/guppy/data/dna_r9.4.1_e8.1_sup.cfg"
process basecall_fast5_gpu { process basecall_fast5_gpu {
container = "${container_url}" container = "${container_url}"
label "gpus" label "gpus"
...@@ -64,7 +64,6 @@ guppy_basecaller --compress_fastq \ ...@@ -64,7 +64,6 @@ guppy_basecaller --compress_fastq \
""" """
} }
params.options = "--model_file /opt/ont/guppy/data/template_r9.4.1_e8.1_sup.jsn"
process basecall_fast5_cpu { process basecall_fast5_cpu {
container = "${container_url}" container = "${container_url}"
label "big_mem_multi_cpus" label "big_mem_multi_cpus"
......
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