nf_projects.md

Projects using nextflow

This page list existing Nextflow based pipeline projects into different categories

• RNASeq
• scRNASeq
• DNASeq
• ChipSeq

To add your project to this list, please fork this project, modify this file and make a merge request.

RNASeq

• https://_https://gitlab.biologie.ens-lyon.fr/gylab/salmoninyeast
• https://github.com/LBMC/readthroughpombe
• https://_https://gitlab.biologie.ens-lyon.fr/vvanoost/nextflow
• https://gitlab.biologie.ens-lyon.fr/elabaron/HIV_project
• https://gitbio.ens-lyon.fr/LBMC/Palladino/RNAseq_nextflow

scRNASeq

• https://gitlab.com/LBMC_UMR5239/sbdm/mars-seq

DNASeq

• https://github.com/LBMC/ChrSexebelari
• https://gitbio.ens-lyon.fr/LBMC/gylab/MappingNoise
• https://gitbio.ens-lyon.fr/LBMC/qrg/droso_hic_group/droso_haplo_rna_seq

Chip-Seq

• https://gitlab.biologie.ens-lyon.fr/Auboeuf/ChIP-seq
• https://gitbio.ens-lyon.fr/LBMC/Bernard/quantitative-nucleosome-analysis